PolyAla

Example Files
File PolyAla.pdb Binary Data PolyAla.cfg
Download and Copy PolyAla.pdb and PolyAla.cfg into your working directory and type:

./modelX -f PolyAla.cfg

Or check the command line tab
Name Parameter Description Parameter Type Parameter Default
gly Add Cb to Glycine bool FALSE
pro Truncate proline bool FALSE
tru Truncate only.Not used yet bool FALSE
Name Parameter Description Parameter Type Parameter Default Parameter Range
atom-type Atom type to be consider in the evaluation: BB,SC,ALL string BB 0-2
biassed Use biassed or non biassed forcefield bool false
command string
config Set a configuration file path
database-name Set the mySQL database name string PepXDB
database-pass Set the mySQL password string modelx
database-port Set the mySQL database port int 3306
database-server Set the mySQL server string localhost
database-user Set the mySQL username string modelx
excluded File with excluded pdb from queries path
help Show help screen
max-threads Set the maximum number of threads int 1
output-dir Set output directory path
output-file Get Pdb file without dna path noDna.pdb
pdb Set a PDB file path
pdb-dir Set PDB directory path
renumber Renumber the pdb bool false
>modelx --command=PolyAla --pdb=PolyAla.pdb --gly=false --pro=false --tru=false --database-name=ModelX --database-server=localhost --database-user=modelx --database-pass=modelx