Docking (PADA1)

Example Files
File Docking.pdb Binary Data Docking.cfg
Download and Copy Docking.pdb and Docking.cfg into your working directory and type:

>modelX -f Docking.cfg

Or check the command line tab
>modelx --command=Docking --pdb=Docking.pdb --pep-mismatches=2 --dnax-length=6 --pepx-length=6 --dubiety=0.1 --sections=72 --cbeta-angles=5 --mol=* --residue-begin=2 --residue-end=245 --fit-threshold=0.5 --fit-level=2 --min-contacts=2 --quick-scan=false --pep-threshold=18 --energy-threshold=-0.1 --concordance-number=1 --atom-type=BB --deep-scan=true --double-check=true --roc=false --database-name=ModelX --database-server=localhost --database-user=modelx --database-pass=modelx